Talks & Service
List of talks, services, and collaborators.
Invited Talks and Lectures
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Accelerating AI-Driven Genome Analysis via Algorithm-Architecture Co-Design
Invited conference talk, Platform for Advanced Scientific Computing (PASC) 2025, Challenges in Systems Design for Omics, Switzerland. June 16 2025. Slides (PDF / PPT) -
Fast and Efficient Genome Analysis via New Algorithms and Architectures
Invited talk, GenScale Team of Inria at the University of Rennes (host: Pierre Peterlongo), Rennes, France. May 6 2025.
Slides (PDF / PPT) -
Enabling Fast, Accurate, and Efficient Real-Time Genomic Sequence Analysis via New Algorithms and Architectures
Invited talk, AMD (virtual). September 13 2024.
Slides (PDF / PPT) -
Enabling Fast, Accurate, and Efficient Real-Time Genomic Sequence Analysis via New Algorithms and Architectures
Invited talk, Huawei Research Center Zurich, Zurich, Switzerland. May 17 2024.
Slides (PDF / PPT) -
Real-Time Sequence Analysis from Raw Nanopore Electrical Signals with Accurate Hash-Based Search Mechanisms
Invited talk, The Broad Institute of MIT and Harvard (host: Victoria Popic, Ph.D.), Cambridge, MA, USA. May 10 2024.
Slides (PDF / PPT) -
Real-Time Analysis of Genomic Sequences from Nanopore Electrical Signals by Fast and Accurate Hash-Based Search
Invited talk, The Jackson Laboratory (JAX) (host: Joshy George, Ph.D.), Farmington, CT, USA. May 6 2024.
Slides (PDF / PPT) -
Real-Time Analysis of Genomic Sequences from Nanopore Electrical Signals by Fast and Accurate Hash-Based Search
Invited talk, Tufts University – Department of Computer Science (host: Prof. Lenore J. Cowen), Medford, MA, USA. May 3 2024.
Video · Slides (PDF / PPT) -
Introduction to Real-Time Raw Nanopore Signal Analysis: RawHash and RawHash2
Invited lecture, BIO310 – Introduction to Bioinformatics (Sabanci University, instructor: Oznur Tastan), Istanbul, Turkey. March 18 2024.
Video · Slides (PDF / PPT) -
RawHash and RawHash2: Enabling Fast and Accurate Real-Time Analysis of Raw Nanopore Signals for Large Genomes using a Hash-Based Seeding Mechanism
Invited talk, Leibniz Institute for Immunotherapy (LIT) (host: Prof. Birte Kehr), Regensburg, Germany. January 17 2024.
Slides (PDF / PPT) -
Enabling Fast, Accurate and Efficient Real-Time Genome Analysis via New Algorithms and Architectures
Invited talk, Technical University of Munich (TUM) – School of Computation, Information and Technology (host: Prof. Ulf Schlichtmann), Munich, Germany. January 16 2024.
Slides (PDF / PPT) -
Enabling Fast, Accurate and Efficient Real-Time Genome Analysis via New Algorithms and Architectures
Invited talk, Huawei Munich Research Center, Munich, Germany. January 15 2024.
Slides (PDF / PPT) -
Enabling Accurate, Fast, and Memory-Efficient Genome Analysis via Efficient and Intelligent Algorithms
Invited talk, University of California, Berkeley – Department of Electrical Engineering and Computer Sciences (host: Giulia Guidi), Berkeley, CA, USA. May 27 2022.
Video · Slides (PDF / PPT) -
Enabling Accurate, Fast, and Memory-Efficient Genome Analysis via Efficient and Intelligent Algorithms
Invited seminar talk, BIN590 Graduate Seminar in Bioinformatics, Graduate School of Informatics, Middle East Technical University (virtual). January 10 2022.
Video · Slides (PDF / PPT)
Conference, Workshop, and Other Talks
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Rawsamble: Overlapping and Assembling Raw Nanopore Signals using a Hash-based Seeding Mechanism
Cold Spring Harbor Laboratory (CSHL) Meeting, Biological Data Science, NY, USA. November 2024.
Video · Slides (PDF / PPT) -
Enabling Fast, Accurate, and Efficient Real-Time Genome Analysis via New Algorithms and Techniques
PhD Thesis Defense, ETH Zurich, Zurich, Switzerland. November 2024.
Video · Slides (PDF / PPT) -
Rawsamble: Overlapping and Assembling Raw Nanopore Signals using a Hash-based Seeding Mechanism
32nd Annual Conference on Intelligent Systems for Molecular Biology (ISMB), Montreal, QC, Canada. July 14 2024.
Video · Slides (PDF / PPT) -
ApHMM: Accelerating Profile Hidden Markov Models for Fast and Energy-Efficient Genome Analysis
High Performance, Edge and Cloud Computing (HiPEAC) 2024, Munich, Germany. January 17 2024.
Video · Slides (PDF / PPT) -
RawHash: Enabling Fast and Accurate Real-Time Analysis of Raw Nanopore Signals for Large Genomes
31st Annual ISMB / 22nd ECCB, Lyon, France. July 25 2023.
Video · Slides (PDF / PPT) -
RawHash: Enabling Fast and Accurate Real-Time Analysis of Raw Nanopore Signals for Large Genomes
5th Workshop on Accelerator Architecture in Computational Biology and Bioinformatics (AACBB), Orlando, FL, USA. June 18 2023.
Video · Slides (PDF / PPT) -
BLEND: A Fast, Memory-Efficient and Accurate Mechanism to Find Fuzzy Seed Matches in Genome Analysis
27th Annual RECOMB, Istanbul, Turkey. April 19 2023.
Video · Slides (PDF / PPT) -
AirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference Genomes
21st Asia–Pacific Bioinformatics Conference (APBC), Changsha, China. April 16 2023.
Video · Slides (PDF / PPT) -
Apollo: A Sequencing-Technology-Independent, Scalable and Accurate Assembly Polishing Algorithm
ExaBiome / PASSION / SAFARI Workshop on Architectures and HPC for Genomics (virtual). May 26 2021.
Video · Slides (PDF / PPT)
Services & Activities
- PC Member: HPCA 2026
- Reviewer/sub-reviewer for RECOMB, RECOMB-Seq, ACM-BCB, Bioinformatics, BMC Bioinformatics, MICRO, ISCA, HPCA, ASPLOS, PACT, IEEE Micro, FAST, DSN, IEEE Transactions on Computers, ISCAS, ISPASS, USENIX ATC.
- Organized Workshops, Panels, Tutorials: