8092 Zürich Switzerland
Can Firtina is a Ph.D. student in the SAFARI Research Group at ETH Zurich, advised by Prof. Onur Mutlu. He obtained his B.Sc. and M.Sc. degrees in Computer Engineering from Bilkent University.
His current research interests broadly span bioinformatics and computer architecture topics, including accurately and quickly identifying sequence similarities, real-time genome analysis, hardware/software co-design for accelerating bioinformatics workloads, correcting sequencing errors, and developing computational tools for genome editing. He is generally interested in developing new algorithms and architectures for bioinformatics applications to enable fast and accurate genome analysis.
ISMB/ECCBRawHash: Enabling Fast and Accurate Real-Time Analysis of Raw Nanopore Signals for Large GenomesIn Proceedings of the 31st Annual Conference on Intelligent Systems for Molecular Biology (ISMB) and the 22nd European Conference on Computational Biology (ECCB), Jul 2023
DACAccelerating Genome Analysis via Algorithm-Architecture Co-DesignIn Proceedings of the 60th Design Automation Conference (DAC), Jul 2023
APBCAirLift: A Fast and Comprehensive Technique for Remapping Alignments between Reference GenomesIn The 21st Asia Pacific Bioinformatics Conference (APBC), Apr 2023
NARGAB"BLEND: a fast, memory-efficient and accurate mechanism to find fuzzy seed matches in genome analysis",NAR Genomics and Bioinformatics, Mar 2023